Publications

Lab I.  2024.  https://ilievlab.org/publications/.

Case NT, Berman J, Blehert DS, Cramer RA, Cuomo C, Currie CR, Ene IV, Fisher MC, Fritz-Laylin LK, Gerstein AC et al..  2022.  The future of fungi: threats and opportunities.. G3 (Bethesda).

Li XV, Leonardi I, Putzel GG, Semon A, Fiers WD, Kusakabe T, Lin W-Y, Gao IH, Doron I, Gutierrez-Guerrero A et al..  2022.  Immune regulation by fungal strain diversity in inflammatory bowel disease.. Nature. 603(7902):672-678.

Leonardi I, Gao IH, Lin W-Y, Allen M, Li XV, Fiers WD, De Celie MBialt, Putzel GG, Yantiss RK, Johncilla M et al..  2022.  Mucosal fungi promote gut barrier function and social behavior via Type 17 immunity.. Cell.

Dohlman AB, Klug J, Mesko M, Gao IH, Lipkin SM, Shen X, Iliev ID.  2022.  A pan-cancer mycobiome analysis reveals fungal involvement in gastrointestinal and lung tumors.. Cell. 185(20):3807-3822.e12.

Dohlman AB, Mendoza DArguijo, Ding S, Gao M, Dressman H, Iliev ID, Lipkin SM, Shen X.  2021.  The cancer microbiome atlas: a pan-cancer comparative analysis to distinguish tissue-resident microbiota from contaminants.. Cell Host Microbe. 29(2):281-298.e5.

Iliev ID, Cadwell K.  2021.  Effects of Intestinal Fungi and Viruses on Immune Responses and Inflammatory Bowel Diseases.. Gastroenterology. 160(4):1050-1066.

Doron I, Leonardi I, Li XV, Fiers WD, Semon A, Bialt-DeCelie M, Migaud M, Gao IH, Lin W-Y, Kusakabe T et al..  2021.  Human gut mycobiota tune immunity via CARD9-dependent induction of anti-fungal IgG antibodies.. Cell.

Iliev ID.  2021.  Mycobiota-host immune interactions in IBD: coming out of the shadows.. Nat Rev Gastroenterol Hepatol.

Doron I, Mesko M, Li XV, Kusakabe T, Leonardi I, Shaw DG, Fiers WD, Lin W-Y, Bialt-DeCelie M, Román E et al..  2021.  Mycobiota-induced IgA antibodies regulate fungal commensalism in the gut and are dysregulated in Crohn's disease.. Nat Microbiol. 6(12):1493-1504.

Annabi N, Baker M, Boettiger A, Chakraborty D, Chen Y, Corbett KS, Correia B, Dahlman J, de Oliveira T, Ertuerk A et al..  2021.  Voices of biotech research.. Nat Biotechnol. 39(3):281-286.

Clemente JC, Iliev ID.  2020.  Editorial overview: Microbiota united-bacteria, fungi and host responses come into focus.. Curr Opin Microbiol. 56:vi-viii.

Fiers WD, Leonardi I, Iliev ID.  2020.  From Birth and Throughout Life: Fungal Microbiota in Nutrition and Metabolic Health.. Annu Rev Nutr.

Leonardi I, Paramsothy S, Doron I, Semon A, Kaakoush NO, Clemente JC, Faith JJ, Borody TJ, Mitchell HM, Colombel J-F et al..  2020.  Fungal Trans-kingdom Dynamics Linked to Responsiveness to Fecal Microbiota Transplantation (FMT) Therapy in Ulcerative Colitis.. Cell Host Microbe.

Chikina AS, Nadalin F, Maurin M, San-Roman M, Thomas-Bonafos T, Li XV, Lameiras S, Baulande S, Henri S, Malissen B et al..  2020.  Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption.. Cell.

Ladinsky MS, Araujo LP, Zhang X, Veltri J, Galan-Diez M, Soualhi S, Lee C, Irie K, Pinker EY, Narushima S et al..  2019.  Endocytosis of commensal antigens by intestinal epithelial cells regulates mucosal T cell homeostasis.. Science. 363(6431)

Li XV, Leonardi I, Iliev ID.  2019.  Gut Mycobiota in Immunity and Inflammatory Disease.. Immunity. 50(6):1365-1379.

Fiers WD, Gao IH, Iliev ID.  2019.  Gut mycobiota under scrutiny: fungal symbionts or environmental transients? Curr Opin Microbiol. 50:79-86.

Rosshart SP, Herz J, Vassallo BG, Hunter A, Wall MK, Badger JH, McCulloch JA, Anastasakis DG, Sarshad AA, Leonardi I et al..  2019.  Laboratory mice born to wild mice have natural microbiota and model human immune responses.. Science. 365(6452)

Limon JJ, Tang J, Li D, Wolf AJ, Michelsen KS, Funari V, Gargus M, Nguyen C, Sharma P, Maymi VI et al..  2019.  Malassezia Is Associated with Crohn's Disease and Exacerbates Colitis in Mouse Models.. Cell Host Microbe. 25(3):377-388.e6.

Moeller JB, Leonardi I, Schlosser A, Flamar A-L, Bessman NJ, Putzel GGarbès, Thomsen T, Hammond M, Jepsen CS, Skjødt K et al..  2019.  Modulation of the fungal mycobiome is regulated by the chitin-binding receptor FIBCD1.. J Exp Med. 216(12):2689-2700.

Doron I, Leonardi I, Iliev ID.  2019.  Profound mycobiome differences between segregated mouse colonies do not influence Th17 responses to a newly introduced gut fungal commensal.. Fungal Genet Biol. 127:45-49.

Uzzan M, Tokuyama M, Rosenstein AK, Tomescu C, SahBandar IN, Ko HM, Leyre L, Chokola A, Kaplan-Lewis E, Rodriguez G et al..  2018.  Anti-α4β7 therapy targets lymphoid aggregates in the gastrointestinal tract of HIV-1-infected individuals.. Sci Transl Med. 10(461)

Leonardi I, Li X, Semon A, Li D, Doron I, Putzel G, Bar A, Prieto D, Rescigno M, McGovern DPB et al..  2018.  CX3CR1+ mononuclear phagocytes control immunity to intestinal fungi.. Science. 359(6372):232-236.

Leonardi I, Li X, Iliev ID.  2018.  Macrophage interactions with fungi and bacteria in inflammatory bowel disease.. Curr Opin Gastroenterol.